Index

_

__init__() (EnsembleModelManager method) (FilterStats method) (IndexSet method) (Locator method) (NormalizationParams method)

__post_init__() (IndexSet method)

A

apply() (NormalizationParams method)

C

check_data() (Locator method) clear_cache() (EnsembleModelManager method) create_ensemble_early_stopping() (EnsembleMixin method) (Locator method)

create_ensemble_folds() (EnsembleMixin method) (Locator method) create_ensemble_lr_scheduler() (EnsembleMixin method) (Locator method) create_network() (in module locator.models)

E

enable_xla_compilation() (GPUOptimizer static method)

EnsembleMixin (class in locator.ensemble_mixin) EnsembleModelManager (class in locator.ensemble_model_manager)

F

filter_snps() (in module locator.data) FilterStats (class in locator.data)

from_groups() (IndexSet class method) from_k_fold() (IndexSet class method) from_manual() (IndexSet class method)

G

get_averaged_normalization_params() (EnsembleModelManager method) get_ensemble_batch_size() (EnsembleMixin method) (Locator method) get_model() (EnsembleModelManager method)

get_normalization_params() (EnsembleModelManager method) get_optimal_batch_size() (GPUOptimizer static method) get_sample_status() (Locator method) get_split() (IndexSet method) GPUOptimizer (class in locator.gpu_optimizer)

H

hold (IndexSet property)

I

impute_missing() (in module locator.data)

IndexSet (class in locator.data) indices (IndexSet attribute)

K

k_fold_split() (IndexSet class method)

kde_predict() (in module locator.plotting)

L

load_ensemble() (EnsembleMixin method) (EnsembleModelManager method) (Locator method) load_genotypes() (Locator method) load_model() (Locator method) Locator (class in locator.core) locator.analysis module locator.core module locator.data module locator.ensemble_mixin module locator.ensemble_model_manager module

locator.gpu_optimizer module locator.loaders module locator.models module locator.parallel module locator.plotting module locator.prediction module locator.sample_weights module locator.training module loss_with_range_penalty() (in module locator.models)

M

mac_threshold (FilterStats attribute) make_tf_dataset() (in module locator.data) meanlat (NormalizationParams attribute) meanlong (NormalizationParams attribute) module locator.analysis locator.core locator.data locator.ensemble_mixin locator.ensemble_model_manager locator.gpu_optimizer locator.loaders locator.models locator.parallel locator.plotting locator.prediction locator.sample_weights locator.training

N

n_biallelic_filtered (FilterStats attribute) n_mac_filtered (FilterStats attribute) n_random_subset (FilterStats attribute) n_samples_filtered (FilterStats attribute) n_samples_original (FilterStats attribute)

n_snps_filtered (FilterStats attribute) n_snps_original (FilterStats attribute) na_mask (IndexSet attribute) NormalizationParams (class in locator.data) normalize_locs() (in module locator.data)

O

optimize_gpu_memory() (GPUOptimizer static method)

P

parallel_holdouts() (in module locator.parallel) parallel_k_fold_holdouts() (in module locator.parallel) parallel_leave_one_out() (in module locator.parallel) parallel_train_ensemble() (in module locator.ensemble_model_manager) parallel_windows_holdouts() (in module locator.parallel) plot_error_summary() (in module locator.plotting) plot_predictions() (in module locator.plotting)

plot_sample_weights() (in module locator.plotting) predict() (Locator method) predict_ensemble() (EnsembleMixin method) (Locator method) predict_ensemble_from_manager() (EnsembleMixin method) (Locator method) predict_from_weights() (Locator method) predict_holdout() (Locator method)

R

random_split() (IndexSet class method) rasterize_species_range() (in module locator.models) reverse() (NormalizationParams method) run_bootstraps() (Locator method) run_holdouts() (Locator method)

run_jacknife() (Locator method) run_jacknife_holdouts() (Locator method) run_k_fold_holdouts() (Locator method) run_leave_one_out() (Locator method) run_windows() (Locator method) run_windows_holdouts() (Locator method)

S

sample_data (Locator property) samples_removed_na (FilterStats attribute) save_ensemble() (EnsembleModelManager method) save_predictions() (EnsembleModelManager method) sdlat (NormalizationParams attribute) sdlong (NormalizationParams attribute)

set_sample_weights() (Locator method) setup_ensemble_gpu_optimization() (EnsembleMixin method) (Locator method) setup_gpu() (in module locator.core) setup_mixed_precision() (GPUOptimizer static method) sort_samples() (Locator method) split_sizes() (IndexSet method)

T

test (IndexSet property) total_samples (IndexSet attribute) train (IndexSet property) train() (Locator method)

train_ensemble() (EnsembleMixin method) (Locator method) train_holdout() (Locator method) train_window() (Locator method)

V

val (IndexSet property)

W

weight_samples() (in module locator.sample_weights)